satijalab/seurat

R toolkit for single cell genomics

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

r-lib/tree-sitter-r

tidyverse/dplyr

dplyr: A grammar of data manipulation

immunogenomics/harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

rstudio/reticulate

R Interface to Python

YuLab-SMU/clusterProfiler

📊 A universal enrichment tool for interpreting omics data

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

jokergoo/ComplexHeatmap

Make Complex Heatmaps

Rdatatable/data.table

R's data.table package extends data.frame:

cole-trapnell-lab/monocle3

rstudio/renv

renv: Project environments for R.

rstudio/rmarkdown

Dynamic Documents for R

r-spatial/sf

Simple Features for R

rstudio/shiny

Easy interactive web applications with R