joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
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YuLab-SMU/clusterProfiler
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benjjneb/dada2
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vegandevs/vegan
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