YuLab-SMU/clusterProfiler
📊 A universal enrichment tool for interpreting omics data
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
rdpeng/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
sqjin/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
benjjneb/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
swirldev/swirl_courses
🎓 A collection of interactive courses for the swirl R package.
briatte/awesome-network-analysis
A curated list of awesome network analysis resources.
chris-mcginnis-ucsf/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data