sqjin/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
YuLab-SMU/clusterProfiler
📊 A universal enrichment tool for interpreting omics data
swirldev/swirl_courses
🎓 A collection of interactive courses for the swirl R package.
vegandevs/vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
rdpeng/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
immunogenomics/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
chris-mcginnis-ucsf/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data