r-lib/tree-sitter-r

Tree-sitter grammar for R

r-spatial/sf

Simple Features for R

satijalab/seurat

R toolkit for single cell genomics

hadley/r4ds

R for data science: a book

nflverse/nflverse-data

Automated nflverse data repository

saeyslab/nichenetr

NicheNet: predict active ligand-target links between interacting cells

stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

cole-trapnell-lab/monocle3

JGCRI/gcam-core

GCAM -- The Global Change Analysis Model

PecanProject/pecan

The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

rstudio/renv

renv: Project environments for R.

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

rstudio/shiny

Easy interactive web applications with R

YuLab-SMU/ggtree

🎄Visualization and annotation of phylogenetic trees

tidyverse/dplyr

dplyr: A grammar of data manipulation

jokergoo/ComplexHeatmap

Make Complex Heatmaps