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rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

R
842 1
143,544

satijalab/seurat

R toolkit for single cell genomics

R
2,291 5
915

stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

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329 1
88

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

R
471 0
142

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R
639 1
146

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

R
584 0
187

stan-dev/rstan

RStan, the R interface to Stan

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1,037 0
269

YuLab-SMU/clusterProfiler

📊 A universal enrichment tool for interpreting omics data

R
1,021 1
256

vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

R
456 3
98

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

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414 2
109

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

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565 1
166

satijalab/seurat-data

Dataset distribution for Seurat

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129 0
46

prisma-flowdiagram/PRISMA2020

Produce PRISMA-2020 compliant flow diagrams

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141 3
70

mojaveazure/seurat-disk

Interfaces for HDF5-based Single Cell File Formats

R
151 1
48