satijalab/seurat

R toolkit for single cell genomics

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

hadley/r4ds

R for data science: a book

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

mojaveazure/seurat-disk

Interfaces for HDF5-based Single Cell File Formats

r-lib/tree-sitter-r

Tree-sitter grammar for R

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

genomicsclass/labs

Rmd source files for the HarvardX series PH525x

tidyverse/ellmer

Call LLM APIs from R

immunogenomics/harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

cole-trapnell-lab/monocle3

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution