satijalab/seurat

R toolkit for single cell genomics

rmaia/pavo

tools for the analysis of color data in R

tidyverse/ggplot2

An implementation of the Grammar of Graphics in R

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

prisma-flowdiagram/PRISMA2020

Produce PRISMA-2020 compliant flow diagrams

stan-dev/rstan

RStan, the R interface to Stan

satijalab/seurat-wrappers

Community-provided extensions to Seurat

karthik/wesanderson

A Wes Anderson color palette for R

YuLab-SMU/clusterProfiler

📊 A universal enrichment tool for interpreting omics data

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

kassambara/ggpubr

'ggplot2' Based Publication Ready Plots

jokergoo/ComplexHeatmap

Make Complex Heatmaps

cole-trapnell-lab/monocle3

immunogenomics/harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis