stuart-lab/signac

R toolkit for the analysis of single-cell chromatin data

rdpeng/ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

satijalab/seurat

R toolkit for single cell genomics

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

prisma-flowdiagram/PRISMA2020

Produce PRISMA-2020 compliant flow diagrams

cole-trapnell-lab/monocle3

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

chris-mcginnis-ucsf/DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

karthik/wesanderson

A Wes Anderson color palette for R

hadley/r4ds

R for data science: a book

sqjin/CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

mojaveazure/seurat-disk

Interfaces for HDF5-based Single Cell File Formats

vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

satijalab/seurat-data

Dataset distribution for Seurat

MRCIEU/TwoSampleMR

R package for performing 2-sample MR using MR-Base database

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq