tidyverse/ggplot2

An implementation of the Grammar of Graphics in R

swirldev/swirl_courses

🎓 A collection of interactive courses for the swirl R package.

satijalab/seurat

R toolkit for single cell genomics

tidyverse/ellmer

Call LLM APIs from R

Rdatatable/data.table

R's data.table package extends data.frame:

joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

rstudio/rmarkdown

Dynamic Documents for R

r-spatial/sf

Simple Features for R

REditorSupport/languageserver

An implementation of the Language Server Protocol for R

rstudio/tinytex

A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live

rstudio/renv

renv: Project environments for R.

benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

rmaia/pavo

tools for the analysis of color data in R

plotly/plotly.R

An interactive graphing library for R

yihui/knitr

A general-purpose tool for dynamic report generation in R

hadley/r4ds

R for data science: a book

r-lib/tree-sitter-r

rstudio/shiny

Easy interactive web applications with R

tidyverse/readr

Read flat files (csv, tsv, fwf) into R

r-lib/devtools

Tools to make an R developer's life easier